R (programming language)

R
Paradigm(s) multi-paradigm: object-oriented, imperative, functional, procedural, reflective
Appeared in 1993[1]
Designed by Ross Ihaka and Robert Gentleman
Developer R Development Core Team
Stable release 2.14.1 (December 22, 2011; 55 days ago (2011-12-22))
Preview release Through Subversion
Typing discipline Dynamic
Influenced by S, Scheme
OS Cross-platform
License GNU General Public License
Website www.r-project.org
R Programming at Wikibooks

R is a programming language and software environment for statistical computing and graphics. The R language is widely used among statisticians for developing statistical software,[2][3] and R is widely used for statistical software development and data analysis.[3]

R is an implementation of the S programming language combined with lexical scoping semantics inspired by Scheme. S was created by John Chambers while at Bell Labs. R was created by Ross Ihaka and Robert Gentleman[4] at the University of Auckland, New Zealand, and now, R is developed by the R Development Core Team, of which Chambers is a member. R is named partly after the first names of the first two R authors (Robert Gentleman and Ross Ihaka), and partly as a play on the name of S.[5]

R is part of the GNU project.[6][7] The source code for the R software environment, which is written primarily in C, Fortran, and R,[8] is freely available under the GNU General Public License, and pre-compiled binary versions are provided for various operating systems. R uses a command line interface; however, several graphical user interfaces are available for use with R.

Contents

Statistical features

R provides a wide variety of statistical and graphical techniques, including linear and nonlinear modeling, classical statistical tests, time-series analysis, classification, clustering, and others. R is easily extensible through functions and extensions, and the R community is noted for its active contributions in terms of packages. There are some important differences, but much code written for S runs unaltered. Many of R's standard functions are written in R itself, which makes it easy for users to follow the algorithmic choices made. For computationally intensive tasks, C, C++, and Fortran code can be linked and called at run time. Advanced users can write C or Java[9] code to manipulate R objects directly.

R is highly extensible through the use of user-submitted packages for specific functions or specific areas of study. Due to its S heritage, R has stronger object-oriented programming facilities than most statistical computing languages. Extending R is also eased by its permissive lexical scoping rules.[10]

According to Rexer's Annual Data Miner Survey in 2010, R has become the data mining tool used by more data miners (43%) than any other.[11]

Another strength of R is static graphics, which can produce publication-quality graphs, including mathematical symbols. Dynamic and interactive graphics are available through additional packages.[12]

R has its own LaTeX-like documentation format, which is used to supply comprehensive documentation, both on-line in a number of formats and in hard copy.

Programming features

R is an interpreted language typically used through a command line interpreter. If one types "2+2" at the command prompt and presses enter, the computer replies with "4".

GeSHi Error: GeSHi could not find the language rsplus (using path /usr/share/php-geshi/geshi/) (code 2)

You need to specify a language like this: <source lang="html4strict">...</source>

Supported languages for syntax highlighting:

abap, actionscript, actionscript3, ada, apache, applescript, apt_sources, asm, asp, autoit, avisynth, bash, basic4gl, bf, bibtex, blitzbasic, bnf, boo, c, c_mac, caddcl, cadlisp, cfdg, cfm, cil, cmake, cobol, cpp, cpp-qt, csharp, css, d, dcs, delphi, diff, div, dos, dot, eiffel, email, erlang, fo, fortran, freebasic, genero, gettext, glsl, gml, gnuplot, groovy, haskell, hq9plus, html4strict, idl, ini, inno, intercal, io, java, java5, javascript, kixtart, klonec, klonecpp, latex, lisp, locobasic, lolcode, lotusformulas, lotusscript, lscript, lsl2, lua, m68k, make, matlab, mirc, modula3, mpasm, mxml, mysql, nsis, oberon2, objc, ocaml, ocaml-brief, oobas, oracle11, oracle8, pascal, per, perl, php, php-brief, pic16, pixelbender, plsql, povray, powershell, progress, prolog, properties, providex, python, qbasic, rails, rebol, reg, robots, ruby, sas, scala, scheme, scilab, sdlbasic, smalltalk, smarty, sql, tcl, teraterm, text, thinbasic, tsql, typoscript, vb, vbnet, verilog, vhdl, vim, visualfoxpro, visualprolog, whitespace, whois, winbatch, xml, xorg_conf, xpp, z80

Like many other languages, R supports matrix arithmetic. R's data structures include scalars, vectors, matrices, data frames (similar to tables in a relational database) and lists.[13] The R object system is extensible and includes objects for, among others, regression models, time-series and geo-spatial coordinates.

R supports procedural programming with functions and, for some functions, object-oriented programming with generic functions. A generic function acts differently depending on the type of arguments it is passed. In other words the generic function dispatches the function (method) specific to that type of object. For example, R has a generic print() function that can print almost every type of object in R with a simple "print(objectname)" syntax.

Although R is mostly used by statisticians and other practitioners requiring an environment for statistical computation and software development, it can also be used as a general matrix calculation toolbox with performance benchmarks comparable to GNU Octave or MATLAB.[14]

Examples

Example 1

The following examples illustrate the basic syntax of the language and use of the command-line interface.

In R and S, the preferred assignment operator is an arrow made from two characters "<-".

GeSHi Error: GeSHi could not find the language rsplus (using path /usr/share/php-geshi/geshi/) (code 2)

You need to specify a language like this: <source lang="html4strict">...</source>

Supported languages for syntax highlighting:

abap, actionscript, actionscript3, ada, apache, applescript, apt_sources, asm, asp, autoit, avisynth, bash, basic4gl, bf, bibtex, blitzbasic, bnf, boo, c, c_mac, caddcl, cadlisp, cfdg, cfm, cil, cmake, cobol, cpp, cpp-qt, csharp, css, d, dcs, delphi, diff, div, dos, dot, eiffel, email, erlang, fo, fortran, freebasic, genero, gettext, glsl, gml, gnuplot, groovy, haskell, hq9plus, html4strict, idl, ini, inno, intercal, io, java, java5, javascript, kixtart, klonec, klonecpp, latex, lisp, locobasic, lolcode, lotusformulas, lotusscript, lscript, lsl2, lua, m68k, make, matlab, mirc, modula3, mpasm, mxml, mysql, nsis, oberon2, objc, ocaml, ocaml-brief, oobas, oracle11, oracle8, pascal, per, perl, php, php-brief, pic16, pixelbender, plsql, povray, powershell, progress, prolog, properties, providex, python, qbasic, rails, rebol, reg, robots, ruby, sas, scala, scheme, scilab, sdlbasic, smalltalk, smarty, sql, tcl, teraterm, text, thinbasic, tsql, typoscript, vb, vbnet, verilog, vhdl, vim, visualfoxpro, visualprolog, whitespace, whois, winbatch, xml, xorg_conf, xpp, z80

Example 2

Short R code calculating Mandelbrot set through the first 20 iterations of equation z = z² + c plotted for different complex constants c. This example demonstrates:

GeSHi Error: GeSHi could not find the language rsplus (using path /usr/share/php-geshi/geshi/) (code 2)

You need to specify a language like this: <source lang="html4strict">...</source>

Supported languages for syntax highlighting:

abap, actionscript, actionscript3, ada, apache, applescript, apt_sources, asm, asp, autoit, avisynth, bash, basic4gl, bf, bibtex, blitzbasic, bnf, boo, c, c_mac, caddcl, cadlisp, cfdg, cfm, cil, cmake, cobol, cpp, cpp-qt, csharp, css, d, dcs, delphi, diff, div, dos, dot, eiffel, email, erlang, fo, fortran, freebasic, genero, gettext, glsl, gml, gnuplot, groovy, haskell, hq9plus, html4strict, idl, ini, inno, intercal, io, java, java5, javascript, kixtart, klonec, klonecpp, latex, lisp, locobasic, lolcode, lotusformulas, lotusscript, lscript, lsl2, lua, m68k, make, matlab, mirc, modula3, mpasm, mxml, mysql, nsis, oberon2, objc, ocaml, ocaml-brief, oobas, oracle11, oracle8, pascal, per, perl, php, php-brief, pic16, pixelbender, plsql, povray, powershell, progress, prolog, properties, providex, python, qbasic, rails, rebol, reg, robots, ruby, sas, scala, scheme, scilab, sdlbasic, smalltalk, smarty, sql, tcl, teraterm, text, thinbasic, tsql, typoscript, vb, vbnet, verilog, vhdl, vim, visualfoxpro, visualprolog, whitespace, whois, winbatch, xml, xorg_conf, xpp, z80

Packages

The capabilities of R are extended through user-created packages, which allow specialized statistical techniques, graphical devices, import/export capabilities, reporting tools, etc. These packages are developed primarily in R, and sometimes in Java, C and Fortran. A core set of packages are included with the installation of R, with more than 4300 (as of March 2011) available at the Comprehensive R Archive Network (CRAN), Bioconductor, and other repositories. [15]

The "Task Views" page (subject list) on the CRAN website lists the wide range of applications (Finance, Genetics, Machine Learning, Medical Imaging, Social Sciences and Spatial statistics) to which R has been applied and for which packages are available.

Other R package resources include Crantastic, a community site for rating and reviewing all CRAN packages, and also R-Forge, a central platform for the collaborative development of R packages, R-related software, and projects. It hosts many unpublished, beta packages, and development versions of CRAN packages.

The Bioconductor project provides R packages for the analysis of genomic data, such as Affymetrix and cDNA microarray object-oriented data handling and analysis tools, and has started to provide tools for analysis of data from next-generation high-throughput sequencing methods.

Reproducible research and automated report generation can be accomplished with packages such as Sweave and odfWeave that support execution of R code embedded within LaTeX, OpenDocument format and other markups.[16]

Milestones

The full list of changes is maintained in the NEWS file. Some highlights are listed below.

Interfaces

Graphical user interfaces

Editors and IDEs

List of R editors

Text editors and Integrated development environments (IDEs) with some support for R include: Bluefish,[21] Crimson Editor, RStudio,[22] ConTEXT, Eclipse,[23] Emacs (Emacs Speaks Statistics), Vim, Tinn-R,[24] Geany, jEdit,[25] Kate,[26] R Productivity Environment (part of Revolution R Enterprise),[27] TextMate, gedit, SciTE, WinEdt (R Package RWinEdt), notepad++,[28].

Scripting languages

R functionality has been made accessible from several scripting languages such as Python (by the RPy[29] interface package), Perl (by the Statistics::R[30] module) and Ruby (with the rsruby[31] rubygem). Scripting in R itself is possible via littler[32] as well as via Rscript.

useR! conferences

"useR!" is the name given to the official annual gathering of R users. The first such event was useR! 2004 in May 2004, Vienna, Austria, which lasted three days.[33] Since then, there have been 7 useR meetings around the world.[34]

The program of all conferences so far consists of two parts:

A major goal of the useR! conference is to bring users from various fields together and provide a platform for discussion and exchange of ideas: both in the formal framework of presentations as well as in the informal times surrounding the conference sessions.

Comparison with SAS, SPSS and Stata

The general consensus is that R compares well with other popular statistical packages, such as SAS, SPSS and Stata.[35] In January 2009, the New York Times ran an article about R gaining acceptance among data analysts and presenting a potential threat for the market share occupied by commercial statistical packages, such as SAS.[36]

Commercial support for R

In 2007, Revolution Analytics was founded to provide commercial support for Revolution R, its distribution of R which also includes components developed by the company. Major additional components include: ParallelR[37], the R Productivity Environment IDE,[38] RevoScaleR (for big data analysis),[39] RevoDeployR[40], web services framework and the ability for reading and writing data in the SAS file format.[41]

In Oct 2011, Oracle announced the Big Data Appliance, which integrates R, Apache Hadoop, Oracle Enterprise Linux, a NoSQL database with the Exadata hardware.[42][43]

Other major commercial software systems supporting connections to R include: Spotfire,[44] SPSS,[45] STATISTICA,[46] Platform Symphony,[47] SAS[48]

See also

References

  1. ^ A Brief History R: Past and Future History, Ross Ihaka, Statistics Department, The University of Auckland, Auckland, New Zealand, available from the CRAN website
  2. ^ Fox, John and Andersen, Robert (January 2005) (PDF). Using the R Statistical Computing Environment to Teach Social Statistics Courses. Department of Sociology, McMaster University. http://www.unt.edu/rss/Teaching-with-R.pdf. Retrieved 2006-08-03. 
  3. ^ a b Vance, Ashlee (2009-01-06). "Data Analysts Captivated by R's Power". New York Times. http://www.nytimes.com/2009/01/07/technology/business-computing/07program.html. Retrieved 2009-04-28. "R is also the name of a popular programming language used by a growing number of data analysts inside corporations and academia. It is becoming their lingua franca..." 
  4. ^ "Robert Gentleman's home page". http://myprofile.cos.com/rgentleman. Retrieved 2009-07-20. 
  5. ^ Kurt Hornik. The R FAQ: Why is R named R?. ISBN 3-900051-08-9. http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-is-R-named-R_003f. Retrieved 2008-01-29. 
  6. ^ "Free Software Foundation (FSF) Free Software Directory: GNU R". http://directory.fsf.org/project/gnur/. Retrieved 2010-07-05. 
  7. ^ "What is R?". http://www.r-project.org/about.html. Retrieved 2009-04-28. 
  8. ^ "How Much of R Is Written in R". http://librestats.com/2011/08/27/how-much-of-r-is-written-in-r/. Retrieved 2011-12-01. 
  9. ^ Duncan Temple Lang, Calling R from Java, http://www.omegahat.org/RSJava/RFromJava.pdf, retrieved 2010-07-05 
  10. ^ Jackman, Simon (Spring 2003). "R For the Political Methodologist" (PDF). The Political Methodologist (Political Methodology Section, American Political Science Association) 11 (1): 20–22. Archived from the original on 2006-07-21. http://web.archive.org/web/20060721143309/http://polmeth.wustl.edu/tpm/tpm_v11_n2.pdf. Retrieved 2006-08-03. 
  11. ^ http://www.rexeranalytics.com/Data-Miner-Survey-Results-2010.html
  12. ^ "CRAN Task View: Graphic Displays & Dynamic Graphics & Graphic Devices & Visualization". The Comprehensive R Archive Network. http://cran.r-project.org/web/views/Graphics.html. Retrieved 2011-08-01. 
  13. ^ Dalgaard, Peter (2002). Introductory Statistics with R. New York, Berlin, Heidelberg: Springer-Verlag. ISBN 0387954759X pages=10–18, 34. 
  14. ^ "Speed comparison of various number crunching packages (version 2)". SciView. http://www.sciviews.org/benchmark. Retrieved 2007-11-03. 
  15. ^ Robert A. Muenchen. "The Popularity of Data Analysis Software". http://sites.google.com/site/r4statistics/popularity. 
  16. ^ http://cran.r-project.org/web/views/ReproducibleResearch.html
  17. ^ Peter Dalgaard. "R-1.0.0 is released". https://stat.ethz.ch/pipermail/r-announce/2000/000127.html. Retrieved 2009-06-06. 
  18. ^ R Extension Presented on RCOMM 2010
  19. ^ "Data Mining / Analytic Tools Used Poll (May 2010)". http://www.kdnuggets.com/polls/2010/data-mining-analytics-tools.html. 
  20. ^ "RWeka: An R Interface to Weka. R package version 0.3-17". Kurt Hornik, Achim Zeileis, Torsten Hothorn and Christian Buchta. http://CRAN.R-project.org/package=RWeka. Retrieved 2009. 
  21. ^ Customizable syntax highlighting based on Perl Compatible regular expressions, with subpattern support and default patterns for..R, tenth bullet point, Bluefish Features, Bluefish website, retrieved 9 July 2008.
  22. ^ JJ Alaire and colleages. "RStudio: new IDE for R". http://www.rstudio.org. Retrieved 2011-08-04. 
  23. ^ Stephan Wahlbrink. "StatET: Eclipse based IDE for R". http://www.walware.de/goto/statet. Retrieved 2009-09-26. 
  24. ^ "Tinn-R Editor - GUI for R Language and Environment". Tinn-R Team. http://sourceforge.net/projects/tinn-r/. Retrieved 2010-11-07. 
  25. ^ Jose Claudio Faria. "R syntax". http://community.jedit.org/?q=node/view/2339. Retrieved 2007-11-03. 
  26. ^ "Syntax Highlighting". Kate Development Team. Archived from the original on 2008-07-07. http://web.archive.org/web/20080707062903/http://www.kate-editor.org/downloads/syntax_highlighting. Retrieved 2008-07-09. 
  27. ^ "R Productivity Environment". Revolution Analytics. http://www.revolutionanalytics.com/products/enterprise-productivity.php. Retrieved 2011-09-03. 
  28. ^ "NppToR: R in Notepad++". sourceforge.net. http://sourceforge.net/projects/npptor/. Retrieved 2010-07-11. 
  29. ^ RPy home page
  30. ^ Statistics::R page on CPAN
  31. ^ RSRuby rubyforge project
  32. ^ littler web site
  33. ^ useR 2004
  34. ^ useR! - International R User Conference
  35. ^ Comparison of R to SAS, Stata and SPSS
  36. ^ Vance, Ashlee (2009-01-07). "Data Analysts Captivated by R's Power". The New York Times. http://www.nytimes.com/2009/01/07/technology/business-computing/07program.html. 
  37. ^ http://www.revolutionanalytics.com/news-events/news-room/2008/enhanced-statistical-analyses-with-parallelr.php
  38. ^ http://blog.revolutionanalytics.com/2009/11/rpe-the-r-productivity-environment-for-windows.html
  39. ^ http://www.revolutionanalytics.com/news-events/news-room/2010/revolution-analytics-brings-big-data-analysis-to-R.php
  40. ^ http://blog.revolutionanalytics.com/2010/09/introducing-revodeployr-web-services-for-r.html
  41. ^ 'Red Hat for stats' goes toe-to-toe with SAS
  42. ^ Oracle Unveils the Oracle Big Data Appliance
  43. ^ Oracle rolls its own NoSQL and Hadoop
  44. ^ Spotfire Integration with S+ and R
  45. ^ http://www.unt.edu/benchmarks/archives/2007/october07/rss.htm
  46. ^ http://www.statsoft.com/solutions/r-language-platform/
  47. ^ R” integrated with Symphony
  48. ^ Calling Functions in the R Language (SAS/IML)

External links